Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
emx2Empty spiracles homeobox 2. (247 aa)    
Predicted Functional Partners:
zmynd10
Zinc finger, MYND-type containing 10.
   
  
 0.711
LOC100693544
LIM homeobox 1b.
     
 0.688
gata5
GATA binding protein 5.
     
 0.675
lhx5
LIM homeobox 5.
     
 0.658
gata4
GATA binding protein 4.
     
 0.628
RAB11FIP3
RAB11 family interacting protein 3.
      
 0.624
lhx1
LIM homeobox 1a.
     
 0.617
mab21l1
Mab-21-like 1.
      
 0.579
zic5
Zic family member 5 (odd-paired homolog, Drosophila).
    
 
 0.558
bsx
Brain-specific homeobox.
   
  0.521
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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