Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100703440BTB (POZ) domain containing 11b. (1030 aa)    
Predicted Functional Partners:
ckap5
Cytoskeleton associated protein 5.
      
 0.620
rell1
RELT like 1.
      
 0.612
ric8b
RIC8 guanine nucleotide exchange factor B.
      
 0.572
ubxn7
UBX domain protein 7.
    
 0.564
mrpl47
Mitochondrial ribosomal protein L47.
      
 0.524
itfg1
Integrin alpha FG-GAP repeat containing 1.
      
 0.522
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.506
LOC109194151
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.506
slc35e3
Solute carrier family 35 member E3.
      
 0.496
bbs9
Bardet-Biedl syndrome 9.
    
 0.487
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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