lhx1 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

lhx1

LIM homeobox 1a. (407 aa)

Predicted Functional Partners:

ccnk

0.828

I3IYF2_ORENI

0.477

I3JSU9_ORENI

0.477

LOC100706951

0.477

LOC100701954

0.456

ptf1a

0.414

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3IYF2_ORENI	lhx1	ENSONIP00000052574	ENSONIP00000013128	LIM domain binding 2a.	LIM homeobox 1a.	0.477
I3IYF2_ORENI	ptf1a	ENSONIP00000052574	ENSONIP00000021410	LIM domain binding 2a.	Pancreas associated transcription factor 1a.	0.444
I3JSU9_ORENI	lhx1	ENSONIP00000063096	ENSONIP00000013128	LIM domain binding 1a.	LIM homeobox 1a.	0.477
I3JSU9_ORENI	ptf1a	ENSONIP00000063096	ENSONIP00000021410	LIM domain binding 1a.	Pancreas associated transcription factor 1a.	0.444
LOC100701954	lhx1	ENSONIP00000000264	ENSONIP00000013128	Paired box 8.	LIM homeobox 1a.	0.456
LOC100706951	lhx1	ENSONIP00000063174	ENSONIP00000013128	LIM-domain binding 1b.	LIM homeobox 1a.	0.477
LOC100706951	ptf1a	ENSONIP00000063174	ENSONIP00000021410	LIM-domain binding 1b.	Pancreas associated transcription factor 1a.	0.444
ccnk	lhx1	ENSONIP00000001356	ENSONIP00000013128	Cyclin K; Belongs to the cyclin family.	LIM homeobox 1a.	0.828
lhx1	I3IYF2_ORENI	ENSONIP00000013128	ENSONIP00000052574	LIM homeobox 1a.	LIM domain binding 2a.	0.477
lhx1	I3JSU9_ORENI	ENSONIP00000013128	ENSONIP00000063096	LIM homeobox 1a.	LIM domain binding 1a.	0.477
lhx1	LOC100701954	ENSONIP00000013128	ENSONIP00000000264	LIM homeobox 1a.	Paired box 8.	0.456
lhx1	LOC100706951	ENSONIP00000013128	ENSONIP00000063174	LIM homeobox 1a.	LIM-domain binding 1b.	0.477
lhx1	ccnk	ENSONIP00000013128	ENSONIP00000001356	LIM homeobox 1a.	Cyclin K; Belongs to the cyclin family.	0.828
lhx1	ptf1a	ENSONIP00000013128	ENSONIP00000021410	LIM homeobox 1a.	Pancreas associated transcription factor 1a.	0.414
ptf1a	I3IYF2_ORENI	ENSONIP00000021410	ENSONIP00000052574	Pancreas associated transcription factor 1a.	LIM domain binding 2a.	0.444
ptf1a	I3JSU9_ORENI	ENSONIP00000021410	ENSONIP00000063096	Pancreas associated transcription factor 1a.	LIM domain binding 1a.	0.444
ptf1a	LOC100706951	ENSONIP00000021410	ENSONIP00000063174	Pancreas associated transcription factor 1a.	LIM-domain binding 1b.	0.444
ptf1a	lhx1	ENSONIP00000021410	ENSONIP00000013128	Pancreas associated transcription factor 1a.	LIM homeobox 1a.	0.414