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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem17Transmembrane protein 17. (184 aa)    
Predicted Functional Partners:
LOC100700830
Transmembrane protein 216.
   
  
 0.594
I3JY08_ORENI
Transmembrane protein 231.
    
 
 0.592
b9d1
B9 protein domain 1.
    
 
 0.590
tctn1
DUF1619 domain-containing protein.
      
 0.574
nphp1
Nephrocystin-1 isoform X2.
      
 0.531
tmem67
Transmembrane protein 67.
      
 0.519
Cc2d2a
Coiled-coil and C2 domain containing 2A.
    
 
 0.512
b9d2
B9 domain containing 2.
    
 
 0.490
Ttll10
Uncharacterized protein.
      
 0.487
I3KBQ4_ORENI
Uncharacterized protein.
      
 0.471
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.