Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmem17Transmembrane protein 17. (184 aa)    
Predicted Functional Partners:
I3JY08_ORENI
Transmembrane protein 231.
    
 
 0.735
Cc2d2a
Coiled-coil and C2 domain containing 2A.
    
 
 0.710
Ttll10
Uncharacterized protein.
      
 0.671
b9d1
B9 protein domain 1.
    
 
 0.667
I3KBQ4_ORENI
Uncharacterized protein.
      
 0.658
LOC100700830
Transmembrane protein 216.
   
  
 0.651
ttc25
Tetratricopeptide repeat domain 25.
      
 0.633
tmem218
Transmembrane protein 218.
   
  
 0.630
tmem67
Transmembrane protein 67.
   
  
 0.628
tctn1
DUF1619 domain-containing protein.
      
 0.628
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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