Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CXorf40AChromosome X open reading frame 40A. (173 aa)    
Predicted Functional Partners:
LOC100697552
Crystallin, gamma S2; Belongs to the beta/gamma-crystallin family.
    
   0.669
klhl7
Kelch-like family member 7.
    
   0.604
I3IUB0_ORENI
Protein tyrosine phosphatase 4A1.
    
   0.575
ENSONIP00000059507
Protein tyrosine phosphatase 4A2b.
    
   0.575
LOC100708025
Cytohesin 4b.
      
 0.574
LOC100700589
GC-rich sequence DNA-binding factor 2.
      
 0.526
ENSONIP00000031409
Gamma-glutamylcyclotransferase isoform X1.
      
 0.457
LOC100712042
Gamma-glutamylcyclotransferase b.
      
 0.457
PAQR9
Progestin and adipoQ receptor family member 9.
      
 0.437
paxbp1
PAX3 and PAX7 binding protein 1.
      
 0.406
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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