Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trim54Tripartite motif containing 54. (365 aa)    
Predicted Functional Partners:
I3KC71_ORENI
Uncharacterized protein.
     
  0.896
I3K972_ORENI
Uncharacterized protein.
     
  0.857
trim55
Tripartite motif containing 55b.
     
  0.857
I3KSL9_ORENI
Tripartite motif containing 63a.
   
 
  0.809
nkain2
Sodium/potassium transporting ATPase interacting 2.
      
 0.755
LOC100701885
Sodium/potassium transporting ATPase interacting 4.
      
 0.666
bhlhe22
Basic helix-loop-helix family, member e22.
      
 0.663
trim23
Tripartite motif containing 23.
    
 0.590
sqstm1
Sequestosome 1.
    
 0.531
ttc13
Tetratricopeptide repeat domain 13.
     
 0.522
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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