STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srrm4Serine/arginine repetitive matrix 4. (624 aa)    
Predicted Functional Partners:
I3J5X9_ORENI
Mex-3 RNA binding family member B.
    
 0.600
slc26a5
Solute carrier family 26 member 5.
      
 0.595
LOC100711408
Myosin VIb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.505
I3KR57_ORENI
Myosin VIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.505
wfs1
Wolfram syndrome 1b (wolframin).
      
 0.499
LOC100709626
Wolfram syndrome 1a (wolframin).
      
 0.499
TMC2
Transmembrane channel-like protein.
    
 0.489
Tmc3
Transmembrane channel-like protein.
    
 0.489
TMC1
Transmembrane channel-like protein.
    
 0.489
cmtr1
Cap methyltransferase 1.
      
 0.483
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.