Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc18Coiled-coil domain containing 18. (1462 aa)    
Predicted Functional Partners:
kiaa2026
Bromo domain-containing protein.
      
 0.719
ccdc13
Coiled-coil domain containing 13.
    
 
 0.688
parpbp
PARP1 binding protein.
   
  
 0.673
kiaa0753
Si:dkey-243i1.1.
      
 0.624
sfxn4
Sideroflexin 4.
      
 0.623
ccdc12
Coiled-coil domain containing 12.
      
 0.622
cep126
Centrosomal protein of 126 kDa isoform X1.
      
 0.622
exd3
Exonuclease 3'-5' domain containing 3.
    
 
 0.621
AKAP9
A-kinase anchoring protein 9.
   
   0.603
dmrt2
Doublesex and mab-3 related transcription factor 2a.
    
   0.594
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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