STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sycp3Synaptonemal complex protein 3. (238 aa)    
Predicted Functional Partners:
ogfod1
2-oxoglutarate and iron-dependent oxygenase domain containing 1.
   
 
 0.951
Syce1
Synaptonemal complex central element protein 1 isoform X1.
     
 0.751
rps23
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
    
 0.705
spo11
SPO11 initiator of meiotic double stranded breaks.
      
 0.693
Msh4
MutS homolog 4.
    
 
 0.689
gnptab
N-acetylglucosamine-1-phosphate transferase subunits alpha and beta.
 
  
 0.680
Mlh1
MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli).
      
 0.677
Dazl
Deleted in azoospermia-like.
    
 
 0.672
syce3
Synaptonemal complex central element protein 3.
     
 0.670
ENSONIP00000056143
Uncharacterized protein LOC106098869 isoform X1.
     
 0.668
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.