LOC100704010 protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100704010

Reticulon 4 receptor. (467 aa)

Predicted Functional Partners:

I3IWI9_ORENI

0.913

LOC100710178

0.679

smtnl1

0.677

LOC100703008

0.592

LOC100700742

0.592

lingo2

0.592

rtn3

0.567

rtn1

0.567

LOC100705697

0.567

ENSONIP00000058746

0.567

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000058746	I3IWI9_ORENI	ENSONIP00000058746	ENSONIP00000074675	Reticulon-3-B isoform X1.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.453
ENSONIP00000058746	LOC100700742	ENSONIP00000058746	ENSONIP00000026176	Reticulon-3-B isoform X1.	Leucine rich repeat and Ig domain containing 1a.	0.567
ENSONIP00000058746	LOC100703008	ENSONIP00000058746	ENSONIP00000007376	Reticulon-3-B isoform X1.	Leucine rich repeat and Ig domain containing 1b.	0.567
ENSONIP00000058746	LOC100704010	ENSONIP00000058746	ENSONIP00000013373	Reticulon-3-B isoform X1.	Reticulon 4 receptor.	0.567
ENSONIP00000058746	lingo2	ENSONIP00000058746	ENSONIP00000026252	Reticulon-3-B isoform X1.	Leucine rich repeat and Ig domain containing 2a.	0.567
I3IWI9_ORENI	ENSONIP00000058746	ENSONIP00000074675	ENSONIP00000058746	Nerve growth factor receptor a (TNFR superfamily, member 16).	Reticulon-3-B isoform X1.	0.453
I3IWI9_ORENI	LOC100700742	ENSONIP00000074675	ENSONIP00000026176	Nerve growth factor receptor a (TNFR superfamily, member 16).	Leucine rich repeat and Ig domain containing 1a.	0.866
I3IWI9_ORENI	LOC100703008	ENSONIP00000074675	ENSONIP00000007376	Nerve growth factor receptor a (TNFR superfamily, member 16).	Leucine rich repeat and Ig domain containing 1b.	0.866
I3IWI9_ORENI	LOC100704010	ENSONIP00000074675	ENSONIP00000013373	Nerve growth factor receptor a (TNFR superfamily, member 16).	Reticulon 4 receptor.	0.913
I3IWI9_ORENI	LOC100705697	ENSONIP00000074675	ENSONIP00000045601	Nerve growth factor receptor a (TNFR superfamily, member 16).	Reticulon.	0.453
I3IWI9_ORENI	LOC100710178	ENSONIP00000074675	ENSONIP00000036676	Nerve growth factor receptor a (TNFR superfamily, member 16).	Reticulon-4 isoform X1.	0.453
I3IWI9_ORENI	lingo2	ENSONIP00000074675	ENSONIP00000026252	Nerve growth factor receptor a (TNFR superfamily, member 16).	Leucine rich repeat and Ig domain containing 2a.	0.866
I3IWI9_ORENI	rtn1	ENSONIP00000074675	ENSONIP00000025353	Nerve growth factor receptor a (TNFR superfamily, member 16).	Reticulon.	0.453
I3IWI9_ORENI	rtn3	ENSONIP00000074675	ENSONIP00000004801	Nerve growth factor receptor a (TNFR superfamily, member 16).	Reticulon.	0.453
LOC100700742	ENSONIP00000058746	ENSONIP00000026176	ENSONIP00000058746	Leucine rich repeat and Ig domain containing 1a.	Reticulon-3-B isoform X1.	0.567
LOC100700742	I3IWI9_ORENI	ENSONIP00000026176	ENSONIP00000074675	Leucine rich repeat and Ig domain containing 1a.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.866
LOC100700742	LOC100704010	ENSONIP00000026176	ENSONIP00000013373	Leucine rich repeat and Ig domain containing 1a.	Reticulon 4 receptor.	0.592
LOC100700742	LOC100705697	ENSONIP00000026176	ENSONIP00000045601	Leucine rich repeat and Ig domain containing 1a.	Reticulon.	0.575
LOC100700742	LOC100710178	ENSONIP00000026176	ENSONIP00000036676	Leucine rich repeat and Ig domain containing 1a.	Reticulon-4 isoform X1.	0.643
LOC100700742	rtn1	ENSONIP00000026176	ENSONIP00000025353	Leucine rich repeat and Ig domain containing 1a.	Reticulon.	0.567