Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC102082961AT rich interactive domain 5A (MRF1-like). (578 aa)    
Predicted Functional Partners:
LOC100699913
Potassium channel subfamily K member.
      
 0.730
LOC100702646
Zinc finger CCCH-type containing 12A.
   
  
 0.721
kcnk3
Potassium channel subfamily K member.
      
 0.707
sox5
SRY-box transcription factor 5.
    
 
 0.704
LOC100707740
CAP-ZIP_m domain-containing protein.
   
  
 0.701
rc3h1
Ring finger and CCCH-type domains 1b.
   
  
 0.660
LOC100709151
Forkhead box H1.
    
   0.641
polr3c
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.637
polr3d
Polymerase (RNA) III (DNA directed) polypeptide D.
      
 0.637
ENSONIP00000061438
annotation not available
      
 0.636
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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