Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100703038Vesicle-trafficking protein SEC22b-B-like. (211 aa)    
Predicted Functional Partners:
Stx5
Syntaxin 5A; Belongs to the syntaxin family.
   
 0.989
gosr2
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
   
 0.987
bet1
Blocked early in transport 1.
   
 0.986
stx18
Syntaxin 18.
   
 0.984
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
    
 0.981
LOC100697254
BCL2 interacting protein 1b.
    
 0.978
bet1l
Bet1 golgi vesicular membrane trafficking protein like.
   
 0.954
LOC100709063
BCL2 interacting protein 1a.
    
 0.944
scfd1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.930
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
 0.895
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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