STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc39Uncharacterized protein. (950 aa)    
Predicted Functional Partners:
ccdc40
Coiled-coil domain containing 40.
    
 
 0.731
IFT122
Intraflagellar transport 122.
   
 
 0.686
LOC100707731
Radial spoke head component 4A.
   
 
 0.673
dnali1
Dynein, axonemal, light intermediate chain 1.
    
 
 0.672
armc4
Armadillo repeat containing 4.
   
 
 0.663
Lrrc6
Leucine rich repeat containing 6.
   
 0.630
I3JSJ8_ORENI
Uncharacterized protein.
   
 0.616
I3JR68_ORENI
NME/NM23 family member 8; Belongs to the NDK family.
   
 
 0.614
rsph9
Radial spoke head 9 homolog.
    
 
 0.607
dnai2
Dynein, axonemal, intermediate chain 2b.
   
 
 0.602
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.