Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
I3JX38_ORENIUBA domain containing 1. (405 aa)    
Predicted Functional Partners:
I3IUU1_ORENI
Ring finger protein 123.
   
 
 0.989
rps27a
Ribosomal protein S27a.
    
 0.904
usp48
Ubiquitin specific peptidase 48; Belongs to the peptidase C19 family.
    
   0.873
utp6
UTP6 small subunit processome component.
    
   0.779
elac2
ElaC ribonuclease Z 2.
    
   0.771
Ubl7
Ubiquitin-like 7b (bone marrow stromal cell-derived).
    
 0.729
rab3a
RAB3A, member RAS oncogene family, b.
      
 0.710
LOC100694195
RAB3A, member RAS oncogene family.
      
 0.710
ubxn6
UBX domain protein 6.
   
  
 0.709
pithd1
PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1.
      
 0.708
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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