Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vps9d1VPS9 domain containing 1. (695 aa)    
Predicted Functional Partners:
pdx1
Pancreatic and duodenal homeobox 1.
    
   0.765
LOC100711123
Ankyrin repeat and SOCS box containing 3.
      
 0.756
pno1
Partner of NOB1 homolog.
      
 0.740
dbndd1
Si:ch1073-174d20.1.
      
 0.719
polr3a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.702
znf276
Uncharacterized protein.
      
 0.692
dnd1
DND microRNA-mediated repression inhibitor 1.
      
 0.657
def8
Differentially expressed in FDCP 8 homolog.
      
 0.655
Mns1
Meiosis-specific nuclear structural 1.
      
 0.644
nudt5
Nudix (nucleoside diphosphate linked moiety X)-type motif 5; Belongs to the Nudix hydrolase family.
      
 0.625
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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