STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps9d1VPS9 domain containing 1. (695 aa)    
Predicted Functional Partners:
pno1
Partner of NOB1 homolog.
      
 0.587
LOC100711123
Ankyrin repeat and SOCS box containing 3.
      
 0.587
znf276
Uncharacterized protein.
      
 0.584
polr3a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.582
dnd1
DND microRNA-mediated repression inhibitor 1.
      
 0.569
dbndd1
Si:ch1073-174d20.1.
      
 0.545
def8
Differentially expressed in FDCP 8 homolog.
      
 0.470
Mns1
Meiosis-specific nuclear structural 1.
      
 0.465
samd11
Sterile alpha motif domain containing 11.
      
 0.457
arrdc3
Arrestin domain containing 3a.
      
 0.443
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.