STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100689750Zinc finger, AN1-type domain 5a. (222 aa)    
Predicted Functional Partners:
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
   
 0.753
I3KTJ2_ORENI
Rabaptin, RAB GTPase binding effector protein 2.
    
 0.749
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.614
rps27a
Ribosomal protein S27a.
    
 0.593
rab21
RAB21, member RAS oncogene family.
   
 
 0.481
rab24
RAB24, member RAS oncogene family.
   
 0.464
LOC100697826
RAB5B, member RAS oncogene family.
   
 0.451
LOC100706267
Uncharacterized protein.
   
 0.451
RAB17
RAB17, member RAS oncogene family.
   
 0.451
rab31
RAB31, member RAS oncogene family.
   
 0.451
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.