STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100705560X-ray repair complementing defective repair in Chinese hamster cells 4. (336 aa)    
Predicted Functional Partners:
lig4
DNA ligase.
    
 0.993
nhej1
Nonhomologous end-joining factor 1.
    
 0.969
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
    
 0.957
xrcc5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
    
 0.955
Xrcc4
Uncharacterized protein.
  
  
 
0.906
Aptx
Aprataxin.
    
 
 0.847
APLF
Aprataxin and PNKP like factor.
    
 
 0.847
lig3
DNA ligase.
    
 0.836
pnkp
Polynucleotide kinase 3'-phosphatase.
    
 
 0.834
mapre1
Microtubule-associated protein, RP/EB family, member 1b.
    
   0.829
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.