STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrf1Nuclear respiratory factor 1. (503 aa)    
Predicted Functional Partners:
tfam
Transcription factor A, mitochondrial.
     
 0.853
ppargc1b
Uncharacterized protein.
     
 0.838
ppargc1a
PPARG coactivator 1 alpha.
   
 0.817
pprc1
PPARG related coactivator 1.
   
 0.732
LOC100706680
Peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X1.
   
 0.686
sirt1
Deacetylase sirtuin-type domain-containing protein.
    
 
 0.598
LOC100705427
Nuclear factor, erythroid 2-like 3.
    
 
 0.587
rbm22
RNA binding motif protein 22.
   
 0.548
Mfn2
Mitofusin 2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
      
 0.548
gabpa
GA binding protein transcription factor subunit alpha.
     
 0.521
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.