STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102082458Ras and Rab interactor 3. (722 aa)    
Predicted Functional Partners:
LOC100695509
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
0.652
LOC100697359
Uncharacterized protein.
    
 0.652
Rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
0.652
Als2
Amyotrophic lateral sclerosis 2 protein.
    
 0.645
cd2ap
CD2-associated protein.
    
 
 0.602
sh3kbp1
SH3-domain kinase binding protein 1.
    
 
 0.602
Sh3d21
SH3 domain containing 21.
    
 
 0.602
gapvd1
GTPase activating protein and VPS9 domains 1.
    
0.596
LOC100694505
Uncharacterized protein.
    
 0.577
LOC100705046
Furin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family.
    
 
 0.567
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.