STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100708236Methyl-CpG binding domain protein 2. (266 aa)    
Predicted Functional Partners:
mta2
Metastasis associated 1 family, member 2.
   
 0.809
LOC100696254
Metastasis associated 1 family, member 3.
   
 0.809
Mta1
Metastasis associated 1.
   
 0.809
LOC100706337
WD_REPEATS_REGION domain-containing protein.
   
 0.787
LOC100711479
Retinoblastoma binding protein 4.
   
 0.787
LOC100695351
Retinoblastoma binding protein 4, like.
   
 0.787
LOC100694214
GATA zinc finger domain containing 2Ab.
   
 0.751
LOC100705552
GATA zinc finger domain containing 2A.
   
 0.751
gatad2b
GATA zinc finger domain containing 2B.
   
 0.751
LOC100705962
Chromodomain helicase DNA binding protein 4a.
    
 0.743
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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