STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx49DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family. (477 aa)    
Predicted Functional Partners:
utp3
UTP3 small subunit processome component.
   
 0.996
wdr46
WD repeat domain 46.
   
 0.985
abt1
Activator of basal transcription 1.
   
 
 0.985
utp25
UTP25 small subunit processor component.
   
 
 0.983
nol6
Nucleolar protein 6.
   
 0.983
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
  
0.979
emg1
EMG1 N1-specific pseudouridine methyltransferase.
   
 0.978
pdcd11
Programmed cell death 11.
   
 0.977
noc4l
Nucleolar complex associated 4 homolog.
   
 0.970
nop14
NOP14 nucleolar protein homolog (yeast).
   
 0.966
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.