LOC100703285 protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100703285

Oxysterol-binding protein; Belongs to the OSBP family. (766 aa)

Predicted Functional Partners:

vapb

0.663

vapa

0.663

LOC100711919

0.623

mospd1

0.512

I3JRQ7_ORENI

0.512

LOC100705898

0.463

gak

0.420

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3JRQ7_ORENI	LOC100703285	ENSONIP00000049109	ENSONIP00000016795	MSP domain-containing protein.	Oxysterol-binding protein; Belongs to the OSBP family.	0.512
LOC100703285	I3JRQ7_ORENI	ENSONIP00000016795	ENSONIP00000049109	Oxysterol-binding protein; Belongs to the OSBP family.	MSP domain-containing protein.	0.512
LOC100703285	LOC100705898	ENSONIP00000016795	ENSONIP00000032541	Oxysterol-binding protein; Belongs to the OSBP family.	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	0.463
LOC100703285	LOC100711919	ENSONIP00000016795	ENSONIP00000002423	Oxysterol-binding protein; Belongs to the OSBP family.	MSP domain-containing protein.	0.623
LOC100703285	gak	ENSONIP00000016795	ENSONIP00000026888	Oxysterol-binding protein; Belongs to the OSBP family.	Cyclin G associated kinase.	0.420
LOC100703285	mospd1	ENSONIP00000016795	ENSONIP00000022177	Oxysterol-binding protein; Belongs to the OSBP family.	Motile sperm domain containing 1.	0.512
LOC100703285	vapa	ENSONIP00000016795	ENSONIP00000023268	Oxysterol-binding protein; Belongs to the OSBP family.	VAMP (vesicle-associated membrane protein)-associated protein A, like.	0.663
LOC100703285	vapb	ENSONIP00000016795	ENSONIP00000008677	Oxysterol-binding protein; Belongs to the OSBP family.	VAMP (vesicle-associated membrane protein)-associated protein B and C.	0.663
LOC100705898	LOC100703285	ENSONIP00000032541	ENSONIP00000016795	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	Oxysterol-binding protein; Belongs to the OSBP family.	0.463
LOC100711919	LOC100703285	ENSONIP00000002423	ENSONIP00000016795	MSP domain-containing protein.	Oxysterol-binding protein; Belongs to the OSBP family.	0.623
gak	LOC100703285	ENSONIP00000026888	ENSONIP00000016795	Cyclin G associated kinase.	Oxysterol-binding protein; Belongs to the OSBP family.	0.420
mospd1	LOC100703285	ENSONIP00000022177	ENSONIP00000016795	Motile sperm domain containing 1.	Oxysterol-binding protein; Belongs to the OSBP family.	0.512
vapa	LOC100703285	ENSONIP00000023268	ENSONIP00000016795	VAMP (vesicle-associated membrane protein)-associated protein A, like.	Oxysterol-binding protein; Belongs to the OSBP family.	0.663
vapb	LOC100703285	ENSONIP00000008677	ENSONIP00000016795	VAMP (vesicle-associated membrane protein)-associated protein B and C.	Oxysterol-binding protein; Belongs to the OSBP family.	0.663