STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100704921Family with sequence similarity 151 member B. (289 aa)    
Predicted Functional Partners:
LOC100706611
Ig-like domain-containing protein.
    
 
 0.622
lingo3
Leucine rich repeat and Ig domain containing 3a.
    
 
 0.622
I3JZ47_ORENI
Zinc finger, FYVE domain containing 16.
 
    
 0.523
Zfyve9
Zinc finger, FYVE domain containing 9a.
 
    
 0.506
ANKRD34A
Ankyrin repeat domain 34A.
      
 0.505
ankrd34c
ANK_REP_REGION domain-containing protein.
      
 0.505
Casz1
Castor zinc finger 1.
      
 0.499
I3J168_ORENI
Zinc finger, FYVE domain containing 9b.
 
    
 0.459
I3KAM2_ORENI
MutS homolog 3 (E. coli); Component of the post-replicative DNA mismatch repair system (MMR).
      
 0.426
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.