STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Wdfy3WD repeat and FYVE domain containing 3. (3536 aa)    
Predicted Functional Partners:
sqstm1
Sequestosome 1.
   
 
 0.837
I3IX36_ORENI
Codanin 1.
      
 0.753
I3KE98_ORENI
Zwilch kinetochore protein.
      
 0.753
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
    
 
 0.714
plekhg7
Pleckstrin homology domain containing, family G (with RhoGef domain) member 7.
    
 0.690
eps15l1
Epidermal growth factor receptor pathway substrate 15-like 1a.
    
 
 0.648
map1lc3c
Microtubule-associated protein 1 light chain 3 gamma.
    
 
 0.646
LOC100701705
Poly (ADP-ribose) glycohydrolase, like.
 
      0.641
il13ra2
Interleukin 13 receptor, alpha 2.
      
 0.639
hps5
Hermansky-Pudlak syndrome 5 protein homolog; May regulate the synthesis and function of lysosomes and of highly specialized organelles, such as melanosomes and platelet dense granules.
   
  
 0.620
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.