STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfdp1Transcription factor. (413 aa)    
Predicted Functional Partners:
rbl1
Retinoblastoma-like 1 (p107).
   
 0.996
LOC100692495
Retinoblastoma-like 2 (p130).
   
 0.996
rb1
Retinoblastoma 1.
   
 0.996
LOC100705578
E2F_TDP domain-containing protein.
  
 0.995
e2f4
E2F transcription factor 4.
   
 0.994
e2f1
E2F transcription factor 1.
   
 0.993
E2F3
E2F transcription factor 3.
   
 0.983
e2f2
Si:ch211-160f23.5.
   
 0.983
I3KQY8_ORENI
Si:ch211-195d17.2.
   
 0.929
I3JLK9_ORENI
E2F_TDP domain-containing protein.
   
 0.923
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.