STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lin28bLin-28 homolog B (C. elegans). (234 aa)    
Predicted Functional Partners:
I3JHG0_ORENI
Drosha ribonuclease III.
   
 
 0.672
I3JW57_ORENI
Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.
   
 
 0.603
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
  
 
 0.598
dgcr8
DGCR8 microprocessor complex subunit.
      
 0.588
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.587
snrpe
Small nuclear ribonucleoprotein E.
   
 0.579
Hmga2
Uncharacterized protein.
      
 0.569
Snrpf
Small nuclear ribonucleoprotein F.
    
  0.566
polr2b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.561
Snrpg
Small nuclear ribonucleoprotein G.
    
 0.560
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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