STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106096811Ubiquitin associated and SH3 domain containing Bb. (652 aa)    
Predicted Functional Partners:
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
     
 0.613
psat1
Phosphoserine aminotransferase.
    
 0.607
enoph1
Enolase-phosphatase E1; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).
     
 0.546
LOC100704840
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.531
I3KPD3_ORENI
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.531
LOC100705870
Fructose-bisphosphatase 1; Belongs to the FBPase class 1 family.
   
 
 0.517
LOC100703707
Fructose-1,6-bisphosphatase 1a; Belongs to the FBPase class 1 family.
   
 
 0.517
mycbpap
Mycbp associated protein.
    
 0.510
pgk1
Phosphoglycerate kinase.
    
 0.510
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.463
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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