F2R protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F2R

G_PROTEIN_RECEP_F1_2 domain-containing protein. (369 aa)

Predicted Functional Partners:

LOC100702313

0.962

proc

0.569

LOC100705119

0.484

LOC100700585

0.484

SAG

0.484

LOC100697215

0.484

LOC100695135

0.484

ARR3

0.453

eprs1

0.438

agt

0.434

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARR3	F2R	ENSONIP00000029437	ENSONIP00000019430	Arrestin 3.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.453
F2R	ARR3	ENSONIP00000019430	ENSONIP00000029437	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Arrestin 3.	0.453
F2R	LOC100695135	ENSONIP00000019430	ENSONIP00000067745	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Arrestin 3a, retinal (X-arrestin).	0.484
F2R	LOC100697215	ENSONIP00000019430	ENSONIP00000067265	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Arrestin, beta 2a.	0.484
F2R	LOC100700585	ENSONIP00000019430	ENSONIP00000030735	G_PROTEIN_RECEP_F1_2 domain-containing protein.	S-antigen; retina and pineal gland (arrestin) a.	0.484
F2R	LOC100702313	ENSONIP00000019430	ENSONIP00000053768	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.962
F2R	LOC100705119	ENSONIP00000019430	ENSONIP00000027491	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Arrestin, beta 1.	0.484
F2R	SAG	ENSONIP00000019430	ENSONIP00000051268	G_PROTEIN_RECEP_F1_2 domain-containing protein.	S-antigen visual arrestin.	0.484
F2R	agt	ENSONIP00000019430	ENSONIP00000000684	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Angiotensinogen; Belongs to the serpin family.	0.434
F2R	eprs1	ENSONIP00000019430	ENSONIP00000078992	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Glutamyl-prolyl-tRNA synthetase.	0.438
F2R	proc	ENSONIP00000019430	ENSONIP00000015545	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.569
LOC100695135	F2R	ENSONIP00000067745	ENSONIP00000019430	Arrestin 3a, retinal (X-arrestin).	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.484
LOC100697215	F2R	ENSONIP00000067265	ENSONIP00000019430	Arrestin, beta 2a.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.484
LOC100697215	LOC100705119	ENSONIP00000067265	ENSONIP00000027491	Arrestin, beta 2a.	Arrestin, beta 1.	0.901
LOC100700585	F2R	ENSONIP00000030735	ENSONIP00000019430	S-antigen; retina and pineal gland (arrestin) a.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.484
LOC100700585	SAG	ENSONIP00000030735	ENSONIP00000051268	S-antigen; retina and pineal gland (arrestin) a.	S-antigen visual arrestin.	0.901
LOC100702313	F2R	ENSONIP00000053768	ENSONIP00000019430	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.962
LOC100702313	agt	ENSONIP00000053768	ENSONIP00000000684	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Angiotensinogen; Belongs to the serpin family.	0.749
LOC100702313	proc	ENSONIP00000053768	ENSONIP00000015545	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Uncharacterized protein.	0.985
LOC100705119	F2R	ENSONIP00000027491	ENSONIP00000019430	Arrestin, beta 1.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.484