STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100710558Tetraspanin. (259 aa)    
Predicted Functional Partners:
itgb4
Integrin beta.
    
 0.642
tm4sf5
Transmembrane 4 L six family member 5.
      
 0.503
I3JQS0_ORENI
Uncharacterized protein.
     
 0.481
LOC102075793
Collagen alpha-1(XVII) chain isoform X2.
     
 0.481
LOC100692535
Integrin beta; Belongs to the integrin beta chain family.
    
 0.477
Itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.477
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.462
LOC100705213
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.456
LOC100704787
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.456
itga3
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
    
 0.456
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.