STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrnp27Small nuclear ribonucleoprotein 27 (U4/U6.U5). (160 aa)    
Predicted Functional Partners:
usp39
Ubiquitin specific peptidase 39.
   
 0.957
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.893
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.880
I3JML8_ORENI
RNA binding motif protein 42.
    
  0.855
snrpe
Small nuclear ribonucleoprotein E.
   
 0.853
prpf4
PRP4 pre-mRNA processing factor 4 homolog (yeast).
   
  0.841
lsm5
U6 snRNA-associated Sm-like protein LSm5 isoform X1.
   
  0.822
snrnp40
Small nuclear ribonucleoprotein 40 (U5).
   
  0.816
Snrpg
Small nuclear ribonucleoprotein G.
   
 0.812
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
   
 0.800
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.