STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps54VPS54 subunit of GARP complex. (987 aa)    
Predicted Functional Partners:
vps52
VPS52 subunit of GARP complex.
    
 0.999
vps53
VPS53 subunit of GARP complex.
   
 0.998
vps51
VPS51 subunit of GARP complex.
   
 0.991
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.922
vps50
VPS50 EARP/GARPII complex subunit.
   
 
 0.907
eipr1
EARP complex and GARP complex interacting protein 1.
    
 
 0.889
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 0.887
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.887
cog3
Component of oligomeric golgi complex 3.
     
 0.885
cog7
Component of oligomeric golgi complex 7.
     
 0.884
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.