STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ascc3Activating signal cointegrator 1 complex subunit 3. (2200 aa)    
Predicted Functional Partners:
prpf8
Pre-mRNA processing factor 8.
   
 0.984
ascc2
Activating signal cointegrator 1 complex subunit 2.
    
 0.982
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.972
Snrpf
Small nuclear ribonucleoprotein F.
   
 0.952
trip4
Thyroid hormone receptor interactor 4.
    
 
 0.947
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.946
snrpe
Small nuclear ribonucleoprotein E.
   
 0.946
ascc1
Activating signal cointegrator 1 complex subunit 1.
    
 0.944
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.943
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 0.935
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.