YTHDF1 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

YTHDF1

YTH N(6)-methyladenosine RNA binding protein 1. (628 aa)

Predicted Functional Partners:

mettl14

0.688

ZFC3H1

0.686

mettl3

0.597

wtap

0.573

alkbh5

0.566

eif3b

0.493

virma

0.482

ythdc1

0.480

fto

0.476

cnot8

0.474

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
YTHDF1	ZFC3H1	ENSONIP00000021169	ENSONIP00000038889	YTH N(6)-methyladenosine RNA binding protein 1.	Zinc finger C3H1-type containing.	0.686
YTHDF1	alkbh5	ENSONIP00000021169	ENSONIP00000003987	YTH N(6)-methyladenosine RNA binding protein 1.	AlkB homolog 5, RNA demethylase.	0.566
YTHDF1	cnot8	ENSONIP00000021169	ENSONIP00000028835	YTH N(6)-methyladenosine RNA binding protein 1.	CCR4-NOT transcription complex, subunit 8.	0.474
YTHDF1	eif3b	ENSONIP00000021169	ENSONIP00000030580	YTH N(6)-methyladenosine RNA binding protein 1.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.493
YTHDF1	fto	ENSONIP00000021169	ENSONIP00000053896	YTH N(6)-methyladenosine RNA binding protein 1.	FTO alpha-ketoglutarate dependent dioxygenase.	0.476
YTHDF1	mettl14	ENSONIP00000021169	ENSONIP00000061770	YTH N(6)-methyladenosine RNA binding protein 1.	Methyltransferase like 14; Belongs to the MT-A70-like family.	0.688
YTHDF1	mettl3	ENSONIP00000021169	ENSONIP00000011724	YTH N(6)-methyladenosine RNA binding protein 1.	Methyltransferase like 3; Belongs to the MT-A70-like family.	0.597
YTHDF1	virma	ENSONIP00000021169	ENSONIP00000007646	YTH N(6)-methyladenosine RNA binding protein 1.	Vir like m6A methyltransferase associated.	0.482
YTHDF1	wtap	ENSONIP00000021169	ENSONIP00000016672	YTH N(6)-methyladenosine RNA binding protein 1.	WT1 associated protein.	0.573
YTHDF1	ythdc1	ENSONIP00000021169	ENSONIP00000015920	YTH N(6)-methyladenosine RNA binding protein 1.	YTH domain containing 1.	0.480
ZFC3H1	YTHDF1	ENSONIP00000038889	ENSONIP00000021169	Zinc finger C3H1-type containing.	YTH N(6)-methyladenosine RNA binding protein 1.	0.686
alkbh5	YTHDF1	ENSONIP00000003987	ENSONIP00000021169	AlkB homolog 5, RNA demethylase.	YTH N(6)-methyladenosine RNA binding protein 1.	0.566
alkbh5	fto	ENSONIP00000003987	ENSONIP00000053896	AlkB homolog 5, RNA demethylase.	FTO alpha-ketoglutarate dependent dioxygenase.	0.887
alkbh5	mettl14	ENSONIP00000003987	ENSONIP00000061770	AlkB homolog 5, RNA demethylase.	Methyltransferase like 14; Belongs to the MT-A70-like family.	0.708
alkbh5	mettl3	ENSONIP00000003987	ENSONIP00000011724	AlkB homolog 5, RNA demethylase.	Methyltransferase like 3; Belongs to the MT-A70-like family.	0.600
alkbh5	virma	ENSONIP00000003987	ENSONIP00000007646	AlkB homolog 5, RNA demethylase.	Vir like m6A methyltransferase associated.	0.590
alkbh5	wtap	ENSONIP00000003987	ENSONIP00000016672	AlkB homolog 5, RNA demethylase.	WT1 associated protein.	0.703
alkbh5	ythdc1	ENSONIP00000003987	ENSONIP00000015920	AlkB homolog 5, RNA demethylase.	YTH domain containing 1.	0.675
cnot8	YTHDF1	ENSONIP00000028835	ENSONIP00000021169	CCR4-NOT transcription complex, subunit 8.	YTH N(6)-methyladenosine RNA binding protein 1.	0.474
eif3b	YTHDF1	ENSONIP00000030580	ENSONIP00000021169	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	YTH N(6)-methyladenosine RNA binding protein 1.	0.493