I3KKP0_ORENI protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I3KKP0_ORENI

Glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein, a. (1619 aa)

Predicted Functional Partners:

ift57

0.615

ift80

0.609

ift172

0.604

I3J9T7_ORENI

0.604

I3KF91_ORENI

0.576

CASK

0.541

LOC100693503

0.541

ift52

0.540

ift81

0.537

cluap1

0.533

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASK	I3KKP0_ORENI	ENSONIP00000051251	ENSONIP00000021685	Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.	Glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein, a.	0.541
CASK	LOC100693503	ENSONIP00000051251	ENSONIP00000060090	Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.770
I3J9T7_ORENI	I3KF91_ORENI	ENSONIP00000063679	ENSONIP00000041602	TNF receptor-associated factor 3 interacting protein 1.	Intraflagellar transport 88 homolog.	0.992
I3J9T7_ORENI	I3KKP0_ORENI	ENSONIP00000063679	ENSONIP00000021685	TNF receptor-associated factor 3 interacting protein 1.	Glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein, a.	0.604
I3J9T7_ORENI	cluap1	ENSONIP00000063679	ENSONIP00000035466	TNF receptor-associated factor 3 interacting protein 1.	Clusterin associated protein 1.	0.995
I3J9T7_ORENI	ift172	ENSONIP00000063679	ENSONIP00000019858	TNF receptor-associated factor 3 interacting protein 1.	Intraflagellar transport 172.	0.990
I3J9T7_ORENI	ift52	ENSONIP00000063679	ENSONIP00000053933	TNF receptor-associated factor 3 interacting protein 1.	Intraflagellar transport 52 homolog (Chlamydomonas).	0.992
I3J9T7_ORENI	ift57	ENSONIP00000063679	ENSONIP00000015580	TNF receptor-associated factor 3 interacting protein 1.	Intraflagellar transport 57 homolog (Chlamydomonas).	0.996
I3J9T7_ORENI	ift80	ENSONIP00000063679	ENSONIP00000032472	TNF receptor-associated factor 3 interacting protein 1.	Intraflagellar transport 80 homolog (Chlamydomonas).	0.995
I3J9T7_ORENI	ift81	ENSONIP00000063679	ENSONIP00000069938	TNF receptor-associated factor 3 interacting protein 1.	Intraflagellar transport 81 homolog.	0.995
I3KF91_ORENI	I3J9T7_ORENI	ENSONIP00000041602	ENSONIP00000063679	Intraflagellar transport 88 homolog.	TNF receptor-associated factor 3 interacting protein 1.	0.992
I3KF91_ORENI	I3KKP0_ORENI	ENSONIP00000041602	ENSONIP00000021685	Intraflagellar transport 88 homolog.	Glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein, a.	0.576
I3KF91_ORENI	cluap1	ENSONIP00000041602	ENSONIP00000035466	Intraflagellar transport 88 homolog.	Clusterin associated protein 1.	0.996
I3KF91_ORENI	ift172	ENSONIP00000041602	ENSONIP00000019858	Intraflagellar transport 88 homolog.	Intraflagellar transport 172.	0.991
I3KF91_ORENI	ift52	ENSONIP00000041602	ENSONIP00000053933	Intraflagellar transport 88 homolog.	Intraflagellar transport 52 homolog (Chlamydomonas).	0.996
I3KF91_ORENI	ift57	ENSONIP00000041602	ENSONIP00000015580	Intraflagellar transport 88 homolog.	Intraflagellar transport 57 homolog (Chlamydomonas).	0.996
I3KF91_ORENI	ift80	ENSONIP00000041602	ENSONIP00000032472	Intraflagellar transport 88 homolog.	Intraflagellar transport 80 homolog (Chlamydomonas).	0.996
I3KF91_ORENI	ift81	ENSONIP00000041602	ENSONIP00000069938	Intraflagellar transport 88 homolog.	Intraflagellar transport 81 homolog.	0.996
I3KKP0_ORENI	CASK	ENSONIP00000021685	ENSONIP00000051251	Glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein, a.	Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.	0.541
I3KKP0_ORENI	I3J9T7_ORENI	ENSONIP00000021685	ENSONIP00000063679	Glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein, a.	TNF receptor-associated factor 3 interacting protein 1.	0.604