STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pou2f3POU domain protein. (397 aa)    
Predicted Functional Partners:
ENSONIP00000006253
POU domain, class 2, transcription factor 2 isoform X1.
     
 
0.900
sp1
Sp1 transcription factor.
    
 0.631
pou2af1
Uncharacterized protein.
    
 
 0.613
snapc4
SnRNA-activating protein complex subunit 4.
    
  0.579
znf143
Zinc finger protein 143b.
    
 0.571
polr3k
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
     
 0.526
LOC100698988
E1A binding protein p300 a.
   
 0.523
LOC100700725
E1A binding protein p300 b.
   
 0.523
gtf2b
General transcription factor IIB.
    
 0.522
snapc3
Small nuclear RNA activating complex, polypeptide 3.
   
 
  0.513
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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