STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pknox1Pbx/knotted 1 homeobox 1.1. (451 aa)    
Predicted Functional Partners:
LOC100704063
Pre-B-cell leukemia homeobox 2.
   
0.653
ENSONIP00000062889
Homeobox protein Hox-B1a-like.
   
 0.640
LOC100704482
Pre-B-cell leukemia homeobox 1a.
    
 0.605
I3KHI1_ORENI
Homeobox domain-containing protein.
    
0.605
I3J0F5_ORENI
Pre-B-cell leukemia transcription factor 4.
    
0.605
pbx3
Homeobox domain-containing protein.
    
 0.605
LOC100699739
Homeobox domain-containing protein.
    
0.605
hoxb1
Homeobox B1b.
   
 0.563
myog
Myogenin.
      
 0.487
hhex
Homeobox domain-containing protein.
   
 
 0.486
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.