STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc93Coiled-coil domain containing 93. (634 aa)    
Predicted Functional Partners:
ENSONIP00000027337
Coiled-coil domain containing 22.
    
 
 0.922
ENSONIP00000058356
Coiled-coil domain-containing protein 22.
    
 
 0.922
COMMD10
COMM domain containing 10.
    
 
 0.888
commd2
COMM domain containing 2.
    
 
 0.882
commd1
Copper metabolism (Murr1) domain containing 1.
   
 
 0.877
vps26c
VPS26 endosomal protein sorting factor C.
    
 
 0.849
vps35l
VPS35 endosomal protein sorting factor like.
    
 
 0.846
commd5
COMM domain containing 5.
    
 
 0.841
commd3
COMM domain containing 3.
    
 
 0.834
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.833
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.