phf6 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

phf6

PHD finger protein 6. (364 aa)

Predicted Functional Partners:

LOC100706337

0.646

LOC100711479

0.646

LOC100695351

0.646

ash2l

0.584

rbbp5

0.581

eed

0.513

suz12

0.475

LOC100701898

0.475

I3K2A8_ORENI

0.466

kdm6a

0.466

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3K2A8_ORENI	LOC100695351	ENSONIP00000015253	ENSONIP00000079377	Lysine (K)-specific demethylase 6A, like.	Retinoblastoma binding protein 4, like.	0.738
I3K2A8_ORENI	LOC100701898	ENSONIP00000015253	ENSONIP00000030096	Lysine (K)-specific demethylase 6A, like.	VEFS-Box domain-containing protein.	0.830
I3K2A8_ORENI	LOC100706337	ENSONIP00000015253	ENSONIP00000038174	Lysine (K)-specific demethylase 6A, like.	WD_REPEATS_REGION domain-containing protein.	0.738
I3K2A8_ORENI	LOC100711479	ENSONIP00000015253	ENSONIP00000070642	Lysine (K)-specific demethylase 6A, like.	Retinoblastoma binding protein 4.	0.738
I3K2A8_ORENI	ash2l	ENSONIP00000015253	ENSONIP00000014499	Lysine (K)-specific demethylase 6A, like.	Ash2 like, histone lysine methyltransferase complex subunit.	0.955
I3K2A8_ORENI	eed	ENSONIP00000015253	ENSONIP00000008996	Lysine (K)-specific demethylase 6A, like.	Embryonic ectoderm development.	0.894
I3K2A8_ORENI	phf6	ENSONIP00000015253	ENSONIP00000022166	Lysine (K)-specific demethylase 6A, like.	PHD finger protein 6.	0.466
I3K2A8_ORENI	rbbp5	ENSONIP00000015253	ENSONIP00000000597	Lysine (K)-specific demethylase 6A, like.	Retinoblastoma binding protein 5.	0.958
I3K2A8_ORENI	suz12	ENSONIP00000015253	ENSONIP00000022798	Lysine (K)-specific demethylase 6A, like.	SUZ12 polycomb repressive complex 2 subunit b.	0.830
LOC100695351	I3K2A8_ORENI	ENSONIP00000079377	ENSONIP00000015253	Retinoblastoma binding protein 4, like.	Lysine (K)-specific demethylase 6A, like.	0.738
LOC100695351	LOC100701898	ENSONIP00000079377	ENSONIP00000030096	Retinoblastoma binding protein 4, like.	VEFS-Box domain-containing protein.	0.891
LOC100695351	LOC100706337	ENSONIP00000079377	ENSONIP00000038174	Retinoblastoma binding protein 4, like.	WD_REPEATS_REGION domain-containing protein.	0.900
LOC100695351	LOC100711479	ENSONIP00000079377	ENSONIP00000070642	Retinoblastoma binding protein 4, like.	Retinoblastoma binding protein 4.	0.900
LOC100695351	eed	ENSONIP00000079377	ENSONIP00000008996	Retinoblastoma binding protein 4, like.	Embryonic ectoderm development.	0.959
LOC100695351	kdm6a	ENSONIP00000079377	ENSONIP00000054504	Retinoblastoma binding protein 4, like.	Lysine (K)-specific demethylase 6A.	0.738
LOC100695351	phf6	ENSONIP00000079377	ENSONIP00000022166	Retinoblastoma binding protein 4, like.	PHD finger protein 6.	0.646
LOC100695351	rbbp5	ENSONIP00000079377	ENSONIP00000000597	Retinoblastoma binding protein 4, like.	Retinoblastoma binding protein 5.	0.693
LOC100695351	suz12	ENSONIP00000079377	ENSONIP00000022798	Retinoblastoma binding protein 4, like.	SUZ12 polycomb repressive complex 2 subunit b.	0.891
LOC100701898	I3K2A8_ORENI	ENSONIP00000030096	ENSONIP00000015253	VEFS-Box domain-containing protein.	Lysine (K)-specific demethylase 6A, like.	0.830
LOC100701898	LOC100695351	ENSONIP00000030096	ENSONIP00000079377	VEFS-Box domain-containing protein.	Retinoblastoma binding protein 4, like.	0.891