STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100709063BCL2 interacting protein 1a. (228 aa)    
Predicted Functional Partners:
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
    
 0.953
LOC100705437
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
    
 0.947
LOC100704478
SEC22 homolog B, vesicle trafficking protein a; Belongs to the synaptobrevin family.
    
 0.947
LOC100703038
Vesicle-trafficking protein SEC22b-B-like.
    
 0.947
stx18
Syntaxin 18.
    
 0.941
LOC100697254
BCL2 interacting protein 1b.
  
  
 
0.901
napg
N-ethylmaleimide-sensitive factor attachment protein, gamma b.
    
  0.631
zw10
Zw10 kinetochore protein.
     
 0.629
LOC100697603
N-ethylmaleimide-sensitive factor a.
    
  0.555
LOC100706831
N-ethylmaleimide-sensitive factor b.
    
  0.555
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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