STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE2OUbiquitin conjugating enzyme E2 O. (1389 aa)    
Predicted Functional Partners:
bap1
Ubiquitin carboxyl-terminal hydrolase.
    
 0.973
bud23
BUD23 rRNA methyltransferase and ribosome maturation factor.
    
   0.926
nap1l1
Nucleosome assembly protein 1-like 1; Belongs to the nucleosome assembly protein (NAP) family.
    
 
 0.925
rps27a
Ribosomal protein S27a.
    
 0.909
LOC100702699
Nucleosome assembly protein 1-like 4a; Belongs to the nucleosome assembly protein (NAP) family.
    
 
 0.906
ENSONIP00000024927
RecQ helicase-like 4.
   
 0.892
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.889
ENSONIP00000047919
Ubiquitin B.
    
 0.878
LOC100704673
WD repeat domain 26b.
   
 
 0.860
I3KI64_ORENI
WD repeat domain 26a.
   
 
 0.860
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.