STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
got1Aspartate aminotransferase. (414 aa)    
Predicted Functional Partners:
mdh2
Malate dehydrogenase.
   
 0.979
gpt
Si:ch211-217a12.1.
   
 0.971
LOC100690242
Glutamic pyruvate transaminase (alanine aminotransferase) 2, like.
   
 0.971
LOC102082087
Aminotran_1_2 domain-containing protein.
   
 0.967
LOC100710799
Aminotran_1_2 domain-containing protein.
   
 0.967
I3JTA4_ORENI
Aminotran_1_2 domain-containing protein.
   
 0.967
LOC100705311
Aspartate aminotransferase.
  
0.966
LOC100693609
4-hydroxyphenylpyruvate dioxygenase.
  
 
 0.964
fh
Fumarate hydratase.
   
 0.963
sdha
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
   
 0.961
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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