STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100696907Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a. (651 aa)    
Predicted Functional Partners:
PTK7
Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.710
LOC100697173
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 2.
  
0.662
LRIT2
Leucine rich repeat, Ig-like and transmembrane domains 2.
  
0.660
HGFAC
HGF activator.
    
  0.654
habp2
Uncharacterized protein.
    
  0.654
LOC100701740
Macrophage stimulating 1 receptor a.
   
 0.648
mst1r
Macrophage stimulating 1 receptor b.
   
 0.648
met
MET proto-oncogene, receptor tyrosine kinase.
   
 0.648
ripk4
Receptor-interacting serine-threonine kinase 4.
    
 0.635
ntng1
Netrin g1a.
    
 0.621
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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