STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ro60Ro60, Y RNA binding protein. (553 aa)    
Predicted Functional Partners:
ssb
Small RNA binding exonuclease protection factor La.
    
 
 0.814
xpot
Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.
      
 0.570
Zmat5
Zinc finger, matrin-type 5.
      
 0.569
hars1
Histidyl-tRNA synthetase.
      
 0.511
cdt1
Chromatin licensing and DNA replication factor 1.
      
 0.471
rnaseh2b
Ribonuclease H2, subunit B.
      
 0.450
ENSONIP00000071939
Cytidine deaminase.
      
 0.447
I3KH17_ORENI
HTH CENPB-type domain-containing protein.
      
 0.443
rtca
RNA 3'-terminal phosphate cyclase.
      
 0.431
LOC100706148
FIP1 like 1b (S. cerevisiae).
      
 0.431
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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