STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aggf1Angiogenic factor with G patch and FHA domains 1. (743 aa)    
Predicted Functional Partners:
Ddx10
RNA helicase.
    
 0.596
ankrd40
Ankyrin repeat domain 40.
      
 0.584
nol6
Nucleolar protein 6.
   
 
 0.575
utp6
UTP6 small subunit processome component.
   
 
 0.571
ddx18
RNA helicase.
    
 0.570
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 0.562
Rsl1d1
Ribosomal L1 domain containing 1.
    
 
 0.550
utp3
UTP3 small subunit processome component.
   
   0.550
pinx1
PIN2 (TERF1) interacting telomerase inhibitor 1.
    
 
0.548
gpatch4
G patch domain containing 4.
    
 
 0.548
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.