STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usf1Upstream transcription factor 1. (299 aa)    
Predicted Functional Partners:
LOC100707737
BHLH domain-containing protein.
  
 
0.937
LOC100691402
Upstream transcription factor 2, c-fos interacting.
  
 
0.937
sp1
Sp1 transcription factor.
    
 0.726
tyr
Tyrosinase.
    
 
 0.697
Oca2
Oculocutaneous albinism II.
      
 0.686
LOC100698988
E1A binding protein p300 a.
    
 0.680
LOC100700725
E1A binding protein p300 b.
    
 0.680
NOG
Noggin 3.
      
 0.663
LOC100709989
CREB binding protein a.
    
 0.639
Crebbp
CREB binding protein b.
    
 0.639
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.