STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsph10bRadial spoke head 10 homolog B. (711 aa)    
Predicted Functional Partners:
ccdc151
Uncharacterized protein.
   
  
 0.634
cfap44
Uncharacterized protein.
   
    0.628
LOC100695509
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.563
LOC100697359
Uncharacterized protein.
    
 0.563
Rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.563
cfap74
Uncharacterized protein.
    
 
 0.549
rsph14
Uncharacterized protein.
    
 
 0.525
Lrrc23
Leucine-rich repeat-containing protein 23 isoform X2.
   
 
 0.503
tsnaxip1
Translin-associated factor X-interacting protein 1 isoform X1.
   
 
 0.489
ccdc146
Coiled-coil domain containing 146.
      
 0.465
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.