STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sox13SRY-box transcription factor 13. (663 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
    
 
 0.624
sox5
SRY-box transcription factor 5.
    
 
0.598
cep85
Centrosomal protein 85.
    
 
 0.597
LOC100707214
Junction plakoglobin a.
   
 0.458
LOC100701331
Uncharacterized protein.
   
 0.458
LOC100693960
Uncharacterized protein.
   
 0.458
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.458
sox4
Transcription factor SOX.
    
0.408
LOC100705177
HMG box domain-containing protein.
     
0.401
tcf7
Transcription factor 7.
     
0.401
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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