STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100705826Sulfotransferase; Belongs to the sulfotransferase 1 family. (399 aa)    
Predicted Functional Partners:
LOC100706353
Sulfotransferase; Belongs to the sulfotransferase 1 family.
  
  
 
0.901
LOC100706621
Sulfotransferase; Belongs to the sulfotransferase 1 family.
  
  
 
0.901
kera
Keratocan.
     
 0.781
lum
Lumican.
     
 0.701
fam210b
Family with sequence similarity 210 member B.
   
  
 0.534
ntan1
Uncharacterized protein.
      
 0.491
LOC100701134
Aggrecan b.
   
 
  0.472
ogn
Osteoglycin, paralog a.
     
 0.468
LOC100698114
Osteoglycin, paralog b.
     
 0.468
ubiad1
UbiA prenyltransferase domain containing 1.
      
 0.465
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.