STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100698215Ring finger protein 215. (406 aa)    
Predicted Functional Partners:
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.708
rps27a
Ribosomal protein S27a.
    
 0.666
LOC100706043
Hydroperoxy icosatetraenoate dehydratase/isomerase.
      
 0.656
rspo2
R-spondin 2.
   
 0.631
ENSONIP00000047919
Ubiquitin B.
    
 0.595
Rspo3
R-spondin 3.
   
 0.582
lgr4
Leucine-rich repeat containing G protein-coupled receptor 4.
    
 0.568
LGR5
Leucine rich repeat containing G protein-coupled receptor 5.
    
 0.568
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.536
I3KDG2_ORENI
U-box domain containing 5.
     
 0.531
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.