STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100709667Cellular nucleic acid-binding protein isoform X1. (166 aa)    
Predicted Functional Partners:
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
  
 0.642
LOC100706673
Heterogeneous nuclear ribonucleoprotein K, like.
   
  
 0.642
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.532
mrm2
Mitochondrial rRNA methyltransferase 2.
   
 
 0.514
I3K9A0_ORENI
Ornithine decarboxylase antizyme 1b.
   
    0.468
Cisd3
CDGSH iron-sulfur domain-containing protein 3, mitochondrial.
      
 0.452
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.451
LOC100707650
SERPINE1 mRNA binding protein 1b.
   
 
 0.434
LOC100699359
SERPINE1 mRNA binding protein 1a.
   
 
 0.434
cct5
Chaperonin containing TCP1, subunit 5 (epsilon).
   
 
 0.420
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.